PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400051398
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 144aa    MW: 15711.7 Da    PI: 8.0888
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400051398genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.6e-0583105123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C+ C ++F ++  L rH++ H
  PGSC0003DMP400051398  83 FSCNFCRRMFYSSQALGRHQNAH 105
                           89******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.3E-481109IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.35E-781111No hitNo description
PROSITE profilePS5015711.69783110IPR007087Zinc finger, C2H2
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MKPSNFNLES EDESKVSNCQ VGSNISVQEI RPGPSLNLQQ ESVPITLDLT LGFNSSDSEL  60
KTNGEASDEV VPHPPTAALS RVFSCNFCRR MFYSSQALGR HQNAHKRERT LANRAMRMGM  120
LSDRYASLAS LPLHGAAFRS LGV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400051398
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006355049.12e-93PREDICTED: zinc finger protein 4-like
RefseqXP_015167649.12e-93PREDICTED: zinc finger protein 4-like
RefseqXP_015167650.12e-93PREDICTED: zinc finger protein 4-like
RefseqXP_015167651.12e-93PREDICTED: zinc finger protein 4-like
TrEMBLM1CVW31e-101M1CVW3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000758901e-102(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12832347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.15e-22zinc finger protein 4
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]