PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400051646
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Nin-like
Protein Properties Length: 496aa    MW: 56373.4 Da    PI: 5.2563
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400051646genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK59.37.2e-1987133450
                RWP-RK   4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50 
                           +isl+dl+++F ++ ++AA +L+v++++ KriCR++GI RWP+ kik
  PGSC0003DMP400051646  87 SISLDDLKQHFGKKREEAAESLDVSVSTFKRICRENGILRWPSKKIK 133
                           69********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF169873.5E-10233IPR003101Coactivator CBP, KIX domain
PROSITE profilePS5151913.77670155IPR003035RWP-RK domain
PfamPF020422.1E-1988133IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003712Molecular Functiontranscription cofactor activity
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MRFEEKIFTI ATSKTDYLRK IALKMLSLTM KTKFQIHVCD ETVLQVVDEN SKVQNAKSPL  60
HNLQSGELGN IQEMDKKLKK KWGIVGSISL DDLKQHFGKK REEAAESLDV SVSTFKRICR  120
ENGILRWPSK KIKRDRVLLS NISSSETVPV ANGPRISIST APTAFASTNV LVNSNQQKSW  180
SSNLSVDKEI GTSLNDHGDE ENIMIQEGDS ANREVVYKPQ ELEPACDGTS HLEKQYLGKE  240
RLSCNTEKEV IVSVEGSSSY DFRNVSEPNQ GHLAVFASFW QVDKDQLISM DDLESDCINS  300
QSTLESISEP SLQNDARRMK LNFDKLITLP LEDLTNPNHE ASMKEALPIL ADNLSLFRDE  360
QAKQLLEFQF DFPNITNSWR DCSQSRIDCQ NFLAEFENTK SLLETSTKEE DDLKDKYTQL  420
ENKENEMMAQ LEAIRKEKNE ITKRRSEKFN QTKHLAALAE EQGGRTKDKE LQMTIASNKL  480
DNLKRQWVSV QSSFN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400051646
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006360369.20.0PREDICTED: uncharacterized protein LOC102591617
TrEMBLM1CWG30.0M1CWG3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000762480.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1552844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38340.17e-12Nin-like family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]