PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400051813
Common NameLOC102590664
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 196aa    MW: 22592.9 Da    PI: 4.3467
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400051813genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1211.1e-3781261128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                           lppGfrF Ptdeelvv++L++k++  +++  +vi+++++y ++PwdL+ k+  e ++wyf+s+r +        +r+t++gyWk+ g d
  PGSC0003DMP400051813   8 LPPGFRFYPTDEELVVHFLQRKAALLPCHP-DVIPDLNLYPYDPWDLDGKAMVEGNKWYFYSRRTQ--------SRITENGYWKSLGVD 87 
                           79*************************999.99**************977777899******9854........799************ PP

                   NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           ++++s+++++vg+kk  +fy g+ p+g+kt+Wvm+e++l
  PGSC0003DMP400051813  88 EPIFSTDNNNVGMKKYYAFYLGELPEGVKTNWVMQEFSL 126
                           *************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.11E-486159IPR003441NAC domain
PROSITE profilePS5100545.3618160IPR003441NAC domain
PfamPF023656.3E-229126IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MGDSNVNLPP GFRFYPTDEE LVVHFLQRKA ALLPCHPDVI PDLNLYPYDP WDLDGKAMVE  60
GNKWYFYSRR TQSRITENGY WKSLGVDEPI FSTDNNNVGM KKYYAFYLGE LPEGVKTNWV  120
MQEFSLNSDS SSGNSRSSSR RRTRSKIDYS GWVICRVYER NYDNNDDDDD NGPELSCLDE  180
VFLSLDDLDE ISLPH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-40416113166NO APICAL MERISTEM PROTEIN
1ut4_B5e-40416113166NO APICAL MERISTEM PROTEIN
1ut7_A5e-40416113166NO APICAL MERISTEM PROTEIN
1ut7_B5e-40416113166NO APICAL MERISTEM PROTEIN
3swm_A5e-40416116169NAC domain-containing protein 19
3swm_B5e-40416116169NAC domain-containing protein 19
3swm_C5e-40416116169NAC domain-containing protein 19
3swm_D5e-40416116169NAC domain-containing protein 19
3swp_A5e-40416116169NAC domain-containing protein 19
3swp_B5e-40416116169NAC domain-containing protein 19
3swp_C5e-40416116169NAC domain-containing protein 19
3swp_D5e-40416116169NAC domain-containing protein 19
4dul_A5e-40416113166NAC domain-containing protein 19
4dul_B5e-40416113166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400051813
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-121HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015166144.11e-143PREDICTED: NAC transcription factor 25
SwissprotQ8GWK61e-81NC104_ARATH; NAC domain-containing protein 104
TrEMBLM1CWU91e-142M1CWU9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000764811e-142(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37662447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.14e-77xylem NAC domain 1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  3. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]