PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400051872
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bZIP
Protein Properties Length: 260aa    MW: 27689.8 Da    PI: 5.4278
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400051872genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_142.41.5e-13203255456
                           XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                            +++rr++kNRe+A rsR+RK+a++ eLe  v +Le+eN +L  e ee +ke 
  PGSC0003DMP400051872 203 QQKQRRMIKNRESAARSRERKQAYTVELESLVTQLEEENARLVREEEEKNKER 255
                           589***************************************98877776664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.3E-5200258IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.082202254IPR004827Basic-leucine zipper domain
PfamPF001703.8E-12203255IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.0E-9204254No hitNo description
CDDcd147071.96E-21204244No hitNo description
Gene3DG3DSA:1.20.5.1701.9E-12205257No hitNo description
PROSITE patternPS000360207222IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MASKVMPSAS TTPNSDRSLH PQNPTSSLHH SHPSRNFDSM NMDEILKNIY SDSDPFACSV  60
SATAAAGGGG DDVGPTKTVD EVWREIVGGG GGGGGSREPE MTLEDFLTKA GAVTEEDVRV  120
PVIAPPPPPP ATGAPSSGGF VVDNMMGTGN CQFPVAMQNG PGGYGMEPQP HMGFGNGVVA  180
ITGSGRGKRR STVEELPADR ATQQKQRRMI KNRESAARSR ERKQAYTVEL ESLVTQLEEE  240
NARLVREEEE KNKERLKQV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400051872
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006351829.10.0PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBLM1CX010.0M1CX01_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000765760.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44080.12e-23bZIP family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]