PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400052017
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 181aa    MW: 20751.8 Da    PI: 10.0896
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400052017genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH421.7e-13356154
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                          ++ +hn+ Er+RR+++N  +++Lr+llP+  k ++kKls  +++  + eYI +L
  PGSC0003DMP400052017  3 KKLNHNASERNRRKKMNFLYSTLRSLLPPTNKHQKKKLSFPATVSYVQEYIPEL 56
                          6789*************************66999999**************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.81E-9261No hitNo description
SuperFamilySSF474591.7E-13272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.973256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.6E-11356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-11361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-6862IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MEKKLNHNAS ERNRRKKMNF LYSTLRSLLP PTNKHQKKKL SFPATVSYVQ EYIPELKKEI  60
ERLSKTKDLL LSKKSNYSLL QIDEYKRKLF MGGTSNSSTT SICASQLSNG QVLVQISTTQ  120
ENDFTISQVF ASLEEDGLIL LNASSFKSFG DNVFRSLHFQ VYLYISLYGC LDIKNVKFER  180
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400052017
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755221e-163HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004249750.27e-96transcription factor bHLH100
TrEMBLM1CXD01e-128M1CXD0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000767591e-128(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22262256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41240.16e-34basic helix-loop-helix protein 100
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]