PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400052018
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 144aa    MW: 16903.2 Da    PI: 8.6896
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400052018genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.71.3e-1079113137
                           CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS- CS
                   HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskK 37 
                           ++ +hn+ Er+RR+++N  +++Lr+llP+ +   +++K
  PGSC0003DMP400052018  79 KKLNHNASERNRRKKMNFLYSTLRSLLPPtN---KHQK 113
                           6789*************************55...5555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.107.7E-978122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.77E-778114No hitNo description
SuperFamilySSF474592.22E-978114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.00778130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-879113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MNSIGWSFEE PLSYDDYQKN KTTITTPQFQ TDQTNKLFEG LRVDNTIDLP SSHHHQQQCL  60
KESEFDVDEL GVERSLMEKK LNHNASERNR RKKMNFLYST LRSLLPPTNK HQKTQGPNEM  120
DIQILKMKLL VMCEKRKKES YIV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400052018
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754491e-145HG975449.1 Solanum pennellii chromosome ch10, complete genome.
GenBankHG9755221e-145HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004249750.25e-69transcription factor bHLH100
RefseqXP_015055301.16e-69transcription factor bHLH100-like
TrEMBLM1CXD11e-102M1CXD1_SOLTU; Uncharacterized protein
STRINGXP_009779323.13e-21(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04150.12e-11bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]