PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400052021
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 106aa    MW: 11873.1 Da    PI: 7.1814
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400052021genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.41.7e-1072101130
                           CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC CS
                   HLH   1 rrrahnerErrRRdriNsafeeLrellPka 30 
                           ++ +hn+ Er RR++iN  ++ Lr+llP++
  PGSC0003DMP400052021  72 KKLNHNASERDRRKNINGLYSSLRSLLPPS 101
                           6789************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.1E-863102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.34771105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-871101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.54E-872101No hitNo description
PfamPF000105.9E-872101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MLAISSPMFS TNYNNFGWLL EDPISQQINI NPMEPLHSSS SSQKNLQHSD SNKFDQITIN  60
GGDHHQSDQT VKKLNHNASE RDRRKNINGL YSSLRSLLPP SDHTV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400052021
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754491e-131HG975449.1 Solanum pennellii chromosome ch10, complete genome.
GenBankHG9755221e-131HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006351394.12e-71PREDICTED: transcription factor ORG2-like
TrEMBLM1CXD32e-70M1CXD3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000767753e-71(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22262256
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]