PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400052127
Common NameLOC102601000
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 607aa    MW: 66800 Da    PI: 6.114
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400052127genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3412e-1042386053373
                  GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                           + ++e+A+a+++g+++ a ++L+rl + a  +g++ qRl+ay++ AL++r+++    +    p+ e    +s+e++ +++ ++e+sP++
  PGSC0003DMP400052127 238 QSIVEAATAITDGKTNVAVQILTRLAQVADVRGSSEQRLTAYMVSALRSRVNS----TEYPPPVME---LHSKEHAVSTQNLYEISPCF 319
                           6789************************************************9....222233333...458999999999******** PP

                  GRAS  92 kfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg.skeeleetgerLakfAeelgvpf 176
                           k+++++aN aI+eav+ +  + +H+iDfdi+qG+Q++ Ll+aLa+++ + p sl+iT++  + +g    +++++++ L+ +A+++g+++
  PGSC0003DMP400052127 320 KLGFMAANLAIVEAVADHpsNIIHVIDFDIGQGGQYLHLLHALATKNTDYPiSLKITAITTEFTGrADSRVNSIEDDLKTLANKVGISL 408
                           *****************998899************************88777*********88888999******************** PP

                  GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
                            fn+ ++ +++dl+ e+L ++++EalaVn++++l+rl+desv++e+ rde+L+ vk+lsPkvv++veqe++ n++ F++r+ ea+ yy 
  PGSC0003DMP400052127 409 IFNI-ISCSITDLSREKLGIEHDEALAVNFAYRLYRLPDESVTTENLRDELLRRVKGLSPKVVTLVEQELNGNTAAFVARVNEACGYYG 496
                           ***9.6889******************************************************************************** PP

                  GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrve 352
                           al+dsl+a++++++  r+k+E+  l+r+++n vaceg++r+er+e ++kWr+r+++aGF+p p+s+++a++    l+  +  + g++v+
  PGSC0003DMP400052127 497 ALLDSLDATVSKDETGRVKIEEG-LSRKLTNSVACEGRDRVERCEVFGKWRARMSMAGFGPRPMSQQIADSLLKRLNSGPrgNPGFNVN 584
                           ***********************.*******************************************999987777766557899**** PP

                  GRAS 353 eesgslvlgWkdrpLvsvSaW 373
                           e+sg + +gW++++L+++SaW
  PGSC0003DMP400052127 585 EQSGGIRFGWMGKTLTVASAW 605
                           ********************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.594210584IPR005202Transcription factor GRAS
PfamPF035147.1E-102238605IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MSSDFSGGVP DFYGGAGRSN LIPMNNAQPQ IQFPHRPDGA SQNFHRRPTF IGKRSLAAFQ  60
QQQQFQFLQQ QQQFQFLQQQ QQQGLGFYLR NVKPRSYQQA SPISPLDYSV SSSSISSEFS  120
PMTARHPLPI STANTNGVLS SGNPDCSAVA SYLNQVQNSL YQESEEKMMN RLHELEKQLL  180
EDNNEEEEDT VSVVTNNDEW SETIKNLITP ISNHLSPASS TSSCSSSMES PPVSSPKQSI  240
VEAATAITDG KTNVAVQILT RLAQVADVRG SSEQRLTAYM VSALRSRVNS TEYPPPVMEL  300
HSKEHAVSTQ NLYEISPCFK LGFMAANLAI VEAVADHPSN IIHVIDFDIG QGGQYLHLLH  360
ALATKNTDYP ISLKITAITT EFTGRADSRV NSIEDDLKTL ANKVGISLIF NIISCSITDL  420
SREKLGIEHD EALAVNFAYR LYRLPDESVT TENLRDELLR RVKGLSPKVV TLVEQELNGN  480
TAAFVARVNE ACGYYGALLD SLDATVSKDE TGRVKIEEGL SRKLTNSVAC EGRDRVERCE  540
VFGKWRARMS MAGFGPRPMS QQIADSLLKR LNSGPRGNPG FNVNEQSGGI RFGWMGKTLT  600
VASAWC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-4026360524374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400052127
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363331.10.0PREDICTED: scarecrow-like protein 8
SwissprotQ9FYR71e-148SCL8_ARATH; Scarecrow-like protein 8
TrEMBLM1CXM00.0M1CXM0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000769320.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40232443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-138SCARECROW-like 8
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]