PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400052752
Common NameLOC102588802
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 165aa    MW: 18628.6 Da    PI: 10.3987
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400052752genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.0001884106123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C +Cg+ Fs    L  H+r+H
  PGSC0003DMP400052752  84 HECLICGMEFSMGQALGGHMRRH 106
                           78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.78E-737106No hitNo description
SMARTSM003550.473860IPR015880Zinc finger, C2H2-like
PfamPF139121.4E-103862IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.5123865IPR007087Zinc finger, C2H2
PROSITE patternPS0002804060IPR007087Zinc finger, C2H2
PfamPF139125.8E-1083108IPR007087Zinc finger, C2H2
SMARTSM003550.2884106IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.1284111IPR007087Zinc finger, C2H2
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MTALMRKSRE DNGDVEAQAM ANCLMLLSSI DRDRRDSFEC KTCKRRFSSF QALGGHRTSH  60
KSMKSTIDIG KFLHGKLSKK RKVHECLICG MEFSMGQALG GHMRRHRAPV NEIKDSSSVR  120
RIPVLKKSNS SKRIFCVDLN LTPDENDDFQ FWPTAPAPVL RCVI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400052752
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-167HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350750.11e-120PREDICTED: zinc finger protein ZAT11-like
TrEMBLM1CZ271e-118M1CZ27_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000779341e-119(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.12e-34C2H2 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]