PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400052776
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 401aa    MW: 44394.4 Da    PI: 10.3526
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400052776genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.66e-08301350147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                           r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  PGSC0003DMP400052776 301 RRPFSVSEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 350
                           678999********************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542362.55E-8105189IPR029071Ubiquitin-related domain
CDDcd017698.01E-4113179No hitNo description
PROSITE profilePS5129415.596296355IPR017930Myb domain
SMARTSM007171.2E-7300353IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-10301351IPR009057Homeodomain-like
SuperFamilySSF466894.97E-16302383IPR009057Homeodomain-like
CDDcd116601.26E-17302352No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MRVMPILEFD MKRTFPGAKT MHVYYNRNIG YKHQRSQRDF PFKKRKLFKC GSFSNSDGEM  60
STDGISSSPT NDLHGNASGS SKASSGGCAA AGTSVFNGGR AFLRPGDSHV KFRIKSFKVP  120
ELFVDIPENA TIGSLKRTVM EAVTAILGGG LRIGVVFQGK KVRDDNKTLL QTGISHDYKF  180
DALGFSLEPN PVQTPQPLGQ DCRSCVFPYE TPQPLTRCPS PSTAVHTGIQ QGRSDDHTGT  240
SLSNFIESDH ESAPSPHYAA LEKISANSRA LVPLTAVNAE ALSAVPLRKP KRSEATQRRI  300
RRPFSVSEVE ALVQAVEKLG TGRWRDVKLR AFDNAKHRTY VDLKDKWKTL VHTARISPQQ  360
RRGEPVPQEL LDRVLTAHAY WSQQQAKQQM KQPSETYLIL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-572883914107Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13645QRDFPFKKRK
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400052776
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-159HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350780.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X2
SwissprotQ6R0E31e-127TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLM1CZ510.0M1CZ51_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000779690.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-123TRF-like 2
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]