PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400052777
Common NameLOC102598179
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 696aa    MW: 76585 Da    PI: 9.3949
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400052777genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.61.2e-07596645147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                           r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  PGSC0003DMP400052777 596 RRPFSVSEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 645
                           678999********************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542367.44E-8400484IPR029071Ubiquitin-related domain
CDDcd017690.002408474No hitNo description
PROSITE profilePS5129415.596591650IPR017930Myb domain
SMARTSM007171.2E-7595648IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-10596646IPR009057Homeodomain-like
SuperFamilySSF466891.26E-15597678IPR009057Homeodomain-like
CDDcd116601.02E-16597647No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
MVLQKRLDYG FNGYQVPPIP RATRSVRRRG IIRRKADGNG TCPFDLLATV AGKLLGEGES  60
SPDSTGSVRG KEQGAIVKDE KVKEAEDRSL KENSYTEGCY ERGFFISELV SQAPVVNRFL  120
SELPHVQNDT ISRPASASMS SDCSEKLLFA KQFVNGESSE EHENFSSKTE REVSGCGVFS  180
SCTLDTENDK QMKIELSNKA KVSTDKGDAI SSSKFPDVWD KKPSTLVTSD ESVKLSLSTY  240
PAPCRSFPVI WNDVKLANKD DDENSGCTRP STPNKASGAA PRVRDQPIKK LLASKYWEEN  300
LKSDDEGHAN SGAKTMHVYY NRNIGYKHQR SQRDFPFKKR KLFKCGSFSN SDGEMSTDGI  360
SSSPTNDLHG NASGSSKASS GGCAAAGTSV FNGGRAFLRP GDSHVKFRIK SFKVPELFVD  420
IPENATIGSL KRTVMEAVTA ILGGGLRIGV VFQGKKVRDD NKTLLQTGIS HDYKFDALGF  480
SLEPNPVQTP QPLGQDCRSC VFPYETPQPL TRCPSPSTAV HTGIQQGRSD DHTGTSLSNF  540
IESDHESAPS PHYAALEKIS ANSRALVPLT AVNAEALSAV PLRKPKRSEA TQRRIRRPFS  600
VSEVEALVQA VEKLGTGRWR DVKLRAFDNA KHRTYVDLKD KWKTLVHTAR ISPQQRRGEP  660
VPQELLDRVL TAHAYWSQQQ AKQQMKQPSE TYLIL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A3e-555836864107Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1331340QRDFPFKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400052777
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350780.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X2
TrEMBLM1CZ520.0M1CZ52_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000779690.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30762348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-136TRF-like 2
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]