PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400052781
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 62aa    MW: 6949.98 Da    PI: 8.4664
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400052781genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS35.31.6e-112561367
                  GRAS 13 ssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalpps 67
                          ++ d++ a+  L+ ++ ++sp+g++++R+a+yf+ AL+arla+++ ely a++ +
  PGSC0003DMP400052781  2 ANYDTRIAHDKLKLIRLHCSPYGEATERMAHYFADALEARLAGTGIELYTAFAKR 56
                          567999***************************************9999998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098510.48161IPR005202Transcription factor GRAS
PfamPF035145.3E-9256IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 62 aa     Download sequence    Send to blast
MANYDTRIAH DKLKLIRLHC SPYGEATERM AHYFADALEA RLAGTGIELY TAFAKRTILS  60
Y*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400052781
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015165701.14e-37PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 9
TrEMBLM1CZ568e-37M1CZ56_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000779731e-37(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1713644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.18e-17SCARECROW-like 14
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]