PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400052860
Common NameLOC107061261
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bZIP
Protein Properties Length: 185aa    MW: 21490.4 Da    PI: 4.7423
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400052860genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_138.32.9e-1250110363
                           XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                           +lk+ rr ++NR++A+rsR RK ++++eLe+kvkeLe       +e+e+ k++ +kl  e+
  PGSC0003DMP400052860  50 DLKKLRRIMSNRLSAQRSRIRKIEYTAELEKKVKELEDTIAWAGSEIENVKDNKKKLMLEN 110
                           69************************************99999999999999999987776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.1E-1045107No hitNo description
SMARTSM003383.8E-1048112IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.55350113IPR004827Basic-leucine zipper domain
PfamPF001709.8E-1251110IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.34E-1051106No hitNo description
CDDcd147031.51E-125397No hitNo description
PROSITE patternPS0003605570IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MDEKRKRSDE TNLDLCLKTP TQDEPINKVQ TLEEAMNFEL KHGHVDPNVD LKKLRRIMSN  60
RLSAQRSRIR KIEYTAELEK KVKELEDTIA WAGSEIENVK DNKKKLMLEN EMLQAQLDIV  120
TDKSNLRIAQ TQELKLELKE LAKTQGIEGQ SSNFYESESI AEIDMDQYLN FDAMNFYPPR  180
IDDL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400052860
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755185e-59HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015165679.11e-133PREDICTED: transcription factor VIP1-like
TrEMBLM1CZC91e-131M1CZC9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000780841e-132(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76151929
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43700.13e-10VIRE2-interacting protein 1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]