PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400052906
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 170aa    MW: 19522.3 Da    PI: 4.7579
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400052906genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.11.5e-16243548
                          -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          T++E++l ++++ ++G++ W++Ia +++ gRt++++k++w++++
  PGSC0003DMP400052906  2 TPQEELLVLQLHSKYGNR-WSKIAGKLP-GRTDNEIKNYWRTHM 43
                          9*****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001678.03E-12143No hitNo description
SMARTSM007171.2E-11145IPR001005SANT/Myb domain
PROSITE profilePS5129424.888147IPR017930Myb domain
PfamPF002495.7E-15242IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-20244IPR009057Homeodomain-like
SuperFamilySSF466892.73E-13251IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MTPQEELLVL QLHSKYGNRW SKIAGKLPGR TDNEIKNYWR THMRKQAQDE KKNTNKASIS  60
PSSSNFSNCS SSSANSPAED SSTERNDCVE LLQVAGENKI YEGDQNMMVY SMDEIWKEVE  120
STEEIETRNH LPVMASTTWD YNYCPDSLWT STHDHCYFDN HQDFSFFTG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400052906
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0130441e-179BT013044.1 Lycopersicon esculentum clone 114294R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015165693.11e-125PREDICTED: transcription factor MYB48-like
TrEMBLM1CZH21e-125M1CZH2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000781501e-126(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.28e-31myb domain protein 48
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]