PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400053030
Common NameLOC102578223
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 249aa    MW: 27924 Da    PI: 4.7314
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400053030genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.42.7e-2196146155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           ++++GVr+++ +grW+AeIrdp+    r kr++lg+++t+eeAa  +++a+ kl+g
  PGSC0003DMP400053030  96 KKFRGVRQRP-WGRWAAEIRDPT----RgKRVWLGTYDTPEEAAIVYDKAAVKLKG 146
                           59********.**********84....35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381232.9E-1134248IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000181.76E-3296154No hitNo description
PROSITE profilePS5103224.19797154IPR001471AP2/ERF domain
PfamPF008471.4E-1397146IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-3097155IPR001471AP2/ERF domain
SMARTSM003801.0E-3997160IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-2397156IPR016177DNA-binding domain
PRINTSPR003678.7E-1098109IPR001471AP2/ERF domain
PRINTSPR003678.7E-10120136IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MTENSVPLIK FTQHIVTTNK HVFSEHSEKS NSELQRVVRI ILTDADATDS SDDEGRNTVR  60
RVKRHVTEIN LMPSPKSIGD RKRRSVSPDS DVTRRKKFRG VRQRPWGRWA AEIRDPTRGK  120
RVWLGTYDTP EEAAIVYDKA AVKLKGPDAV TNFPVSTTAE VTVTVTETET ESVADGGDKS  180
ENDVALSPTS VLCNDDFAPF DNLGFCEVDA FGFDVDSLFR LPDFAMTEKY YGEEFGEFDF  240
DDFALEAR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-2196155464ATERF1
3gcc_A5e-2196155464ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18196KRRSVSPDSDVTRRKK
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400053030
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
GenBankLEU892570.0U89257.1 Lycopersicon esculentum DNA-binding protein Pti6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350890.10.0PREDICTED: pathogenesis-related genes transcriptional activator PTI6
SwissprotO046821e-154PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6
TrEMBLM1CZU00.0M1CZU0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000782940.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52272137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.18e-36cytokinin response factor 4
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]