PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400053056
Common NameLOC102586567
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 216aa    MW: 24531.7 Da    PI: 6.9176
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400053056genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.26.9e-1985139256
                           T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           rk+ ++tk+q   Lee F++n++++ +++e LA++l+L+ rqV vWFqNrRa+ k
  PGSC0003DMP400053056  85 RKKLRLTKQQSFLLEESFRQNHTLNPKQKEALAMQLKLKARQVEVWFQNRRARSK 139
                           78889************************************************98 PP
2HD-ZIP_I/II110.98.9e-3685173189
           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                           +kk+rl+k+q+ lLEesF+++++L+p++K++la +L+l++rqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL+keveeLr+
  PGSC0003DMP400053056  85 RKKLRLTKQQSFLLEESFRQNHTLNPKQKEALAMQLKLKARQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLNEQNRRLKKEVEELRA 173
                           69*************************************************************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.92E-1872142IPR009057Homeodomain-like
PROSITE profilePS5007116.90881141IPR001356Homeobox domain
SMARTSM003891.4E-1583145IPR001356Homeobox domain
PfamPF000463.2E-1685139IPR001356Homeobox domain
CDDcd000861.73E-1485142No hitNo description
Gene3DG3DSA:1.10.10.604.0E-1785139IPR009057Homeodomain-like
PROSITE patternPS000270116139IPR017970Homeobox, conserved site
SMARTSM003404.0E-20141184IPR003106Leucine zipper, homeobox-associated
PfamPF021836.5E-10141175IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MEIMPESSAC LELTMSIPGS SSNSSSFPSS GEGGGGRYNM MRDLELDINQ VPSSGNINDE  60
EISMEEEEEE SSNNNINDNI NGASRKKLRL TKQQSFLLEE SFRQNHTLNP KQKEALAMQL  120
KLKARQVEVW FQNRRARSKL KQTEMECEYL KRWFGSLNEQ NRRLKKEVEE LRAMKVGPPT  180
VLSPHSCHPL PASTLTMCPH CERVTKTNVR DESRI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18389SRKKLRL
2133141RRARSKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400053056
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2387411e-105AC238741.2 Solanum lycopersicum chromosome 05 clone C05HBa0078I05, complete sequence.
GenBankHG9754441e-105HG975444.1 Solanum pennellii chromosome ch05, complete genome.
GenBankHG9755171e-105HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015162725.11e-158PREDICTED: homeobox-leucine zipper protein HOX3-like
SwissprotQ0JKX14e-76HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH384e-76HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLM1CZW31e-157M1CZW3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000783291e-157(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.15e-60homeobox-leucine zipper protein 17
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]