PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400053170
Common NameLOC102585229
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 123aa    MW: 14293.2 Da    PI: 6.9319
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400053170genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.74.8e-123375448
                          S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +++eEd+l+++ +++lG + W++Ia++++   +  ++k++w+++l
  PGSC0003DMP400053170 33 FSKEEDDLIIRFHALLGDR-WSLIAERLP-EHSTIEVKNYWNSHL 75
                          89***************99.*********.9***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.35E-112884IPR009057Homeodomain-like
SMARTSM007171.0E-102977IPR001005SANT/Myb domain
PROSITE profilePS5129414.672979IPR017930Myb domain
PfamPF002493.6E-113375IPR001005SANT/Myb domain
CDDcd001671.03E-83375No hitNo description
Gene3DG3DSA:1.10.10.605.0E-163376IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MSKSCYDPNK DKIQEAWSKD DSMANCCSKR IIFSKEEDDL IIRFHALLGD RWSLIAERLP  60
EHSTIEVKNY WNSHLKLKLT KMGIDPMNYR IQEYVHKKNL EFFSSRNKGF DVEISDAESS  120
SA*
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400053170
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754442e-32HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006344323.19e-87PREDICTED: myb-related protein Hv1-like isoform X1
SwissprotP200261e-19MYB1_HORVU; Myb-related protein Hv1
TrEMBLM1D0692e-85M1D069_SOLTU; Uncharacterized protein
STRINGXP_009596675.12e-30(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71030.13e-23MYB-like 2
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]