PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400053330
Common NameLOC102592498
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 151aa    MW: 16795 Da    PI: 9.8361
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400053330genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.31.5e-1470117355
                           HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           + h  +Er+RR+r+ ++f  L +l+P++     kKl+Ka++L  A++YIk+L+
  PGSC0003DMP400053330  70 QDHVLAERKRRERLTQRFIALSTLIPNL-----KKLDKATVLGDAIQYIKQLE 117
                           56999***********************.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.96167116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-1270117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-1871128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.46E-1872129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.74E-1372121No hitNo description
SMARTSM003536.0E-1673122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MPAKNQFENL NTFKVVKREV PSGTTINFSS SVNSMDDSDF GDIEAMRFGA AVTTTTDQKK  60
SYNRTSVQAQ DHVLAERKRR ERLTQRFIAL STLIPNLKKL DKATVLGDAI QYIKQLEEQV  120
KTLEEKNKPE IPAAKRPRLV SSCDDSSSSG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-1471126864Transcription factor MYC2
5gnj_B3e-1471126864Transcription factor MYC2
5gnj_E3e-1471126864Transcription factor MYC2
5gnj_F3e-1471126864Transcription factor MYC2
5gnj_G3e-1471126864Transcription factor MYC2
5gnj_I3e-1471126864Transcription factor MYC2
5gnj_M3e-1471126864Transcription factor MYC2
5gnj_N3e-1471126864Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17580ERKRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400053330
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-126HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006357857.21e-107PREDICTED: transcription factor bHLH18-like
RefseqXP_015169068.11e-107PREDICTED: transcription factor bHLH18-like
RefseqXP_015169069.11e-107PREDICTED: transcription factor bHLH18-like
SwissprotQ9T0722e-23BH025_ARATH; Transcription factor bHLH25
TrEMBLM1D0K21e-106M1D0K2_SOLTU; Uncharacterized protein
TrEMBLM1D0K31e-105M1D0K3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000786981e-106(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-25bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]