PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400053331
Common NameLOC102592498
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 210aa    MW: 23532.3 Da    PI: 6.5485
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400053331genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.52.8e-14129176355
                           HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           + h  +Er+RR+r+ ++f  L +l+P++     kKl+Ka++L  A++YIk+L+
  PGSC0003DMP400053331 129 QDHVLAERKRRERLTQRFIALSTLIPNL-----KKLDKATVLGDAIQYIKQLE 176
                           56999***********************.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.961126175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-12129176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.9E-18130187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.64E-14131180No hitNo description
SuperFamilySSF474591.57E-17131188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-16132181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MDTWWSEMET SSMNDHNFVN QSETMTPFNE LPFNSKPFST FSPPPPPSSV ISNYSYSNSM  60
PAKNQFENLN TFKVVKREVP SGTTINFSSS VNSMDDSDFG DIEAMRFGAA VTTTTDQKKS  120
YNRTSVQAQD HVLAERKRRE RLTQRFIALS TLIPNLKKLD KATVLGDAIQ YIKQLEEQVK  180
TLEEKNKPEI PAAKRPRLVS SCDDSSSSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-13130179857Transcription factor MYC2
5gnj_B1e-13130179857Transcription factor MYC2
5gnj_E1e-13130179857Transcription factor MYC2
5gnj_F1e-13130179857Transcription factor MYC2
5gnj_G1e-13130179857Transcription factor MYC2
5gnj_I1e-13130179857Transcription factor MYC2
5gnj_M1e-13130179857Transcription factor MYC2
5gnj_N1e-13130179857Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134139ERKRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400053331
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006357857.21e-154PREDICTED: transcription factor bHLH18-like
RefseqXP_015169068.11e-154PREDICTED: transcription factor bHLH18-like
RefseqXP_015169069.11e-154PREDICTED: transcription factor bHLH18-like
TrEMBLM1D0K31e-153M1D0K3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000786981e-154(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45081443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.15e-25bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]