PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400053333
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 201aa    MW: 22683.9 Da    PI: 8.6708
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400053333genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.46.9e-152471355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                          + h  +Er+RR+r+ + f +L +l+P++     kKl+Ka+iL  A+ YIk+L+
  PGSC0003DMP400053333 24 QDHVLAERKRRERLTQYFVTLSTLIPNL-----KKLDKASILGDAITYIKQLE 71
                          56999***********************.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.9482170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-122471IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.9E-182582IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-172683IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.89E-142675No hitNo description
SMARTSM003536.0E-162776IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MGFGADDISQ TKKMNYSRTP LQAQDHVLAE RKRRERLTQY FVTLSTLIPN LKKLDKASIL  60
GDAITYIKQL EEQVKRLDEE ANKEPVVAVK RSRLLSNYDN SSTCNENSNK SVVPDIEVRA  120
SDGNVLIRVS CKKQEGIIKE IFSQVEMFHL TITSSSVIPF GYDTTHITIV AQMDHQLNMT  180
TDNVANKIRL SIMKVINSHE *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12934ERKRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400053333
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755141e-130HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006357745.11e-146PREDICTED: transcription factor bHLH18-like
TrEMBLM1D0K41e-145M1D0K4_SOLTU; Uncharacterized protein
TrEMBLM1D0K51e-146M1D0K5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000786991e-146(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-48bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]