PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400053542
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TALE
Protein Properties Length: 416aa    MW: 45980.7 Da    PI: 6.2357
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400053542genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.59.7e-083583912154
                           HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
              Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           k +yp++e++++L +++gL+ +q+ +WF N+R +
  PGSC0003DMP400053542 358 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 391
                           469*****************************87 PP
2ELK28.82.7e-10312333122
                   ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                           ELKh+L+++Y+++++++++E++
  PGSC0003DMP400053542 312 ELKHELKQGYKEKIVDIREEIL 333
                           9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.1E-19146190IPR005540KNOX1
PfamPF037903.7E-17148189IPR005540KNOX1
SMARTSM012566.4E-25199255IPR005541KNOX2
PfamPF037911.2E-18205254IPR005541KNOX2
SMARTSM011886.1E-4312333IPR005539ELK domain
PROSITE profilePS512139.969312332IPR005539ELK domain
PfamPF037899.6E-7312333IPR005539ELK domain
PROSITE profilePS5007111.726332395IPR001356Homeobox domain
SMARTSM003894.7E-11334399IPR001356Homeobox domain
SuperFamilySSF466894.71E-16334398IPR009057Homeodomain-like
CDDcd000863.13E-11335396No hitNo description
Gene3DG3DSA:1.10.10.602.9E-25339396IPR009057Homeodomain-like
PfamPF059201.2E-17352391IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MALHQQQQQQ QQQQNAVLRS MLPESPHHDV RKSPPTWLNT SLLRQQHSQF ANASSPSSAA  60
AAAAVAGGNN FLHLQTSNSD SSNSNQWLSP TAAAGGGGGV TGGGGGHNDE LSESMNFAKK  120
MSQQHSGGGE ENNNNNNEEE NSWEREKCKA DILNHPLYDQ LLSAHVSCLR IATPVDQLPR  180
IDAQLAQSQN VVAKYSVLGQ GQPPLDDKDL DQFMTHYVLL LSSFKEQLQQ HVRVHAMEAV  240
MACWELEQSL QSLTGVAPGE GTGATMSDDD DDQADSDTNF LDGGFDGPDS MGFGPLVPTE  300
SERSLMERVR QELKHELKQG YKEKIVDIRE EILRKRRAGK LPGDTTSVLK AWWQSHSKWP  360
YPTEEDKARL VQETGLQLKQ INNWFINQRK RNWHSNPSTS SSQKSKRKSA GEIKQ*
Functional Description ? help Back to Top
Source Description
UniProtMay have a role to play in formative events in ovule and embryo morphogenesis.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400053542
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ4776890.0KJ477689.1 Solanum tuberosum class II knox protein (HOX1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001233945.20.0homeobox protein knotted-1-like LET12
SwissprotO223000.0LET12_SOLLC; Homeobox protein knotted-1-like LET12
TrEMBLM1D1280.0M1D128_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000789900.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14322472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-152KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]