PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400053561
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 313aa    MW: 32969.6 Da    PI: 7.7634
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400053561genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.81e-091535727
                          SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH  7 rffartGtCkyGdrCkFaHgp 27
                          ++++rtG Ck+G++Ck++H++
  PGSC0003DMP400053561 15 QYYMRTGMCKFGASCKYHHPR 35
                          59*****************96 PP
2zf-CCCH382.8e-125781327
                          S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                          +++C+++++tG+Ck+G +CkF+H++
  PGSC0003DMP400053561 57 EKECSHYMKTGQCKFGITCKFHHPQ 81
                          679********************97 PP
3zf-CCCH35.91.3e-11266292127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                           +++++C++++++G Ck+G++Ck++H+p
  PGSC0003DMP400053561 266 PGQPECHYYMKYGDCKFGSSCKYHHPP 292
                           5789*********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.211335IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-61535IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.4181536IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-55481IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.8495482IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-65582IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-95781IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-46080IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.211265293IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-5265292IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-9267292IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5269292IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MFTVIMLVVP GYDLQYYMRT GMCKFGASCK YHHPRQGGES PSLVIHNIYG YPLRPNEKEC  60
SHYMKTGQCK FGITCKFHHP QPAGVQVPAS AAGPFPLPAA VPPPATYPEL QPLPVDSAEQ  120
YGMVTGNWPV IRPALLPGSY IPDTYGPMLF PPGMVPVSDW TPYLGSTSPV PYQTTQFAAG  180
AGPVPSQITH SAAGAGPVPC QTSHSAAGAG PVPSQTTQSA AGAGPVYGHT QLSASAPAYA  240
SPYVSLSASL GASSSIQDGL AFPERPGQPE CHYYMKYGDC KFGSSCKYHH PPEWSGSKAA  300
LILRAMGLPP DL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400053561
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006356701.10.0PREDICTED: zinc finger CCCH domain-containing protein 6-like isoform X2
TrEMBLM1D1460.0M1D146_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000790190.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.37e-60C3H family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]