PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400053612
Common NameLOC102583653
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 244aa    MW: 26768.4 Da    PI: 4.4628
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400053612genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2552e-171060155
                   AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          +++kGVr +k +g+Wv+e+r p++   r r++lg++++ae+Aa+a +aa  +l+g
  PGSC0003DMP400053612 10 PKFKGVRLRK-WGKWVSEVRLPNS---RDRIWLGSYDSAEKAARAFDAAQFCLRG 60
                          79******99.*******999833...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.00E-291070No hitNo description
PfamPF008471.3E-111060IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-281170IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-191170IPR016177DNA-binding domain
SMARTSM003802.9E-301174IPR001471AP2/ERF domain
PROSITE profilePS5103220.8241168IPR001471AP2/ERF domain
PRINTSPR003672.7E-81223IPR001471AP2/ERF domain
PRINTSPR003672.7E-83450IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MEANPTHDQP KFKGVRLRKW GKWVSEVRLP NSRDRIWLGS YDSAEKAARA FDAAQFCLRG  60
PKAKFNFPDS PPDISGGQRL SPAEIQAVAA RFANDYSPSV VQEIQRDDHE GNIGNINSHV  120
INMEKDEISL STTSSCDVPP MVVQMGTSTV AEMDWAFYND MMENYPYNAS GPPPEFFCDP  180
YYPGAGIGAG AGAGGGGVLD INLSSNLYSP PHFPQRTTPN YDDDDTGNGG DEHYSQQSFL  240
WNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-138681172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400053612
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006356706.10.0PREDICTED: ethylene-responsive transcription factor ERF017-like
SwissprotQ84QC23e-43ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLM1D1780.0M1D178_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000790940.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19392466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.15e-46ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  3. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  4. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]