PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400053719
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 152aa    MW: 17715 Da    PI: 6.2855
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400053719genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.13.4e-1954106456
                           -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           ++++  +q+++Le+ Fe +++++ +++ ++A+++gL+ rq+ +WFqNrRa++k
  PGSC0003DMP400053719  54 KRRLRVDQVQALEKIFEVDNKLDPDRKVKIAQEIGLQPRQIAIWFQNRRARWK 106
                           4568889*********************************************9 PP
2HD-ZIP_I/II124.54.9e-4053142291
           HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                           kkrrl  +qv++LE+ Fe ++kL+p+rKv++a+e+glqprq+a+WFqnrRAR+ktkqlE+dy+ Lk++y+al+++ +++e+e+e L +e
  PGSC0003DMP400053719  53 KKRRLRVDQVQALEKIFEVDNKLDPDRKVKIAQEIGLQPRQIAIWFQNRRARWKTKQLERDYNILKSNYEALQHNYTKVEHEKEGLITE 141
                           9**********************************************************************************999876 PP

           HD-ZIP_I/II  91 l 91 
                           +
  PGSC0003DMP400053719 142 V 142
                           5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.58E-1948110IPR009057Homeodomain-like
PROSITE profilePS5007116.08248108IPR001356Homeobox domain
SMARTSM003891.4E-1851112IPR001356Homeobox domain
CDDcd000861.54E-1653109No hitNo description
PfamPF000462.0E-1654106IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.0E-2060107IPR009057Homeodomain-like
PRINTSPR000311.9E-57988IPR000047Helix-turn-helix motif
PROSITE patternPS00027083106IPR017970Homeobox, conserved site
PRINTSPR000311.9E-588104IPR000047Helix-turn-helix motif
PfamPF021837.3E-13108142IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MKRFSFSDSS GKLLYPTEEK NTENLGYSNE FQAMLDGLED EDGIEESGCG TGKKRRLRVD  60
QVQALEKIFE VDNKLDPDRK VKIAQEIGLQ PRQIAIWFQN RRARWKTKQL ERDYNILKSN  120
YEALQHNYTK VEHEKEGLIT EVIINLPHFL I*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100108RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269|PubMed:14623244}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400053719
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankY173060.0Y17306.1 Lycopersicon esculentum mRNA for homeodomain protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015158857.11e-100PREDICTED: homeobox-leucine zipper protein ATHB-6-like
SwissprotQ940J11e-44ATB16_ARATH; Homeobox-leucine zipper protein ATHB-16
TrEMBLM1D1G81e-108M1D1G8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000792301e-99(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.13e-43homeobox protein 6
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]