PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400053791
Common NameLOC102584254
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRF
Protein Properties Length: 319aa    MW: 35401.2 Da    PI: 8.5559
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400053791genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.66.1e-254892145
                   WRC  1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45
                          d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+
  PGSC0003DMP400053791 48 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVES 92
                          79****************************************986 PP
2QLQ28.54.6e-111221637
                   QLQ 16 lAyKyLaanqPvPpeLlqaiqk 37
                          ++yKyL+a++PvPp+L+++i++
  PGSC0003DMP400053791  1 MIYKYLVAGLPVPPDLVVPIRR 22
                          8*******************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF088805.9E-6121IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166614.801122IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.7624892IPR014977WRC domain
PfamPF088793.6E-214991IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MIYKYLVAGL PVPPDLVVPI RRSFEAISAR FFHHPSLGYC SYYGKKFDPE PGRCRRTDGK  60
KWRCSKDAYP DSKYCERHMH RGRNRSRKPV ESQSTSQSLS TSMSQITTGS SNTRGSFQNS  120
SSGSFQNMPL YSVANSGNYG STATKLQMEP VSYGIDNKDY RYLHGITPDA DEHNLSSEAS  180
ATVRSLGMGT NTDSTWVLPS QVSSSPMARS KNDSQLLGSS TEMHLPNLLE PMIDATISKR  240
RHQHCFFGSD IDSPGTVKEE QHSMRPFFNE WPTAKESWSN LDDEGSNKNN FSTTQLSISI  300
PIAPSNFSSR SACSPNDT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400053791
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3031710.0AY303171.1 Solanum bulbocastanum chromosome 8 clone UW177O13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006364478.10.0PREDICTED: growth-regulating factor 4-like
TrEMBLM1D1M90.0M1D1M9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000793380.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7432384
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.11e-38growth-regulating factor 5
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]