PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400053831

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

YABBY

Protein Properties

Length: 173aa MW: 19678.6 Da PI: 9.4846

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400053831	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	178.6	3.6e-55	1	137	24	170
YABBY 24 vsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprv 112 vsvP +sl+ +vtvrCGhCt+l svn+a a q ++++h + ++ + + e k++ + ++ ++++ s l + +++v + PGSC0003DMP400053831 1 VSVPCSSLLDIVTVRCGHCTNLWSVNMAAAFQSSSSQNH-HVQVPNYTAPEYKMDFGSSTKCNMNRMS---------LRTPITNNVHEE 79 8*************************99999999998.3333333333333333222222222222.........233333444444 PP YABBY 113 ppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl PGSC0003DMP400053831 80 RIVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 137 4589**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.4E-58	1	137	IPR006780	YABBY protein
SuperFamily	SSF47095	4.84E-8	82	130	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.2E-4	85	131	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
VSVPCSSLLD IVTVRCGHCT NLWSVNMAAA FQSSSSQNHH VQVPNYTAPE YKMDFGSSTK 60 CNMNRMSLRT PITNNVHEER IVNRPPEKRQ RVPSAYNQFI KEEIQRIKAN NPDISHREAF 120 STAAKNWAHF PHIHFGLMLE SNNQAKLACG NVLITQIYIY LHLYKTLMVH KL*

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400053831

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ667744	0.0	KJ667744.1 Solanum sisymbriifolium YAB5 protein mRNA, complete cds.
GenBank	KJ667745	0.0	KJ667745.1 Solanum aethiopicum YAB5 protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006358281.1	1e-110	PREDICTED: axial regulator YABBY 5-like
Swissprot	Q8GW46	1e-72	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	M1D1R6	1e-127	M1D1R6_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400079392	1e-110	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	8e-73	YABBY family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400053831

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]