PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400053917
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family DBB
Protein Properties Length: 253aa    MW: 27960.4 Da    PI: 5.5156
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400053917genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.98.9e-08435536
              zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg 36
                           C+ ++++e++ +C  ++  lC++C  + H+ 
  PGSC0003DMP400053917  4 QCDVCDKEEASVYCSADEATLCQSCDYQVHHA 35
                          7***************************9743 PP
2zf-B_box28.53.2e-095592338
              zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
                           + C+ ++e ++ lfC++++  lC++C l +Hk   Ht
  PGSC0003DMP400053917 55 SPLCDICQERRALLFCKEDRAILCKECDLPIHKAneHT 92
                          689*****************************888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.907147IPR000315B-box-type zinc finger
CDDcd000212.02E-5333No hitNo description
SMARTSM003361.5E-5447IPR000315B-box-type zinc finger
PfamPF006433.3E-6434IPR000315B-box-type zinc finger
SMARTSM003364.7E-1553100IPR000315B-box-type zinc finger
PROSITE profilePS5011910.38153100IPR000315B-box-type zinc finger
PfamPF006431.5E-75593IPR000315B-box-type zinc finger
CDDcd000211.38E-956100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0080167Biological Processresponse to karrikin
GO:1900458Biological Processnegative regulation of brassinosteroid mediated signaling pathway
GO:2000306Biological Processpositive regulation of photomorphogenesis
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MKIQCDVCDK EEASVYCSAD EATLCQSCDY QVHHANKLAS KHLRFSLIHP SFKDSPLCDI  60
CQERRALLFC KEDRAILCKE CDLPIHKANE HTKKHNRFLL SGVQLSSDVL ASNSNNQNSI  120
SPTGSAASNA GTNNFKARSG NFGMKSNSIS STTESTPNYF QVDYHVQEGS VSTSSISEYL  180
TETLPGWHVE DFLEYPSSSS YDLGYFLFCF VGDQSFCNAS GIALCLLPAL IIEYGIPICF  240
KYSLPNQFFM GD*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis. Plays a negative role in brassinosteroid responses. {ECO:0000269|PubMed:22535582}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400053917
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006362043.11e-147PREDICTED: B-box zinc finger protein 20
SwissprotQ0IGM77e-67BBX20_ARATH; B-box zinc finger protein 20
TrEMBLM1D1Y50.0M1D1Y5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000795070.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14632364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39070.13e-69DBB family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Wei CQ, et al.
    The Arabidopsis B-box protein BZS1/BBX20 interacts with HY5 and mediates strigolactone regulation of photomorphogenesis.
    J Genet Genomics, 2016. 43(9): p. 555-563
    [PMID:27523280]
  3. Thussagunpanit J, et al.
    Involvement of STH7 in light-adapted development in Arabidopsis thaliana promoted by both strigolactone and karrikin.
    Biosci. Biotechnol. Biochem., 2017. 81(2): p. 292-301
    [PMID:27858514]