PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400053923
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TALE
Protein Properties Length: 345aa    MW: 38358.8 Da    PI: 5.1145
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400053923genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.51.3e-091101471954
                           HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
              Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           Fe   ++yp+ +++  LA+++gLt +qV++WF N R +
  PGSC0003DMP400053923 110 FEHflHPYPKDSDKIMLARQTGLTRSQVSNWFINARVR 147
                           664459******************************88 PP
2BELL73.92.6e-241433072
                  BELL 30 lqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72
                          +q+v+ssF++vag g+akpYt+lAl++iSrhFrcL+dai++qi
  PGSC0003DMP400053923  1 MQIVVSSFDVVAGEGAAKPYTALALQTISRHFRCLRDAICDQI 43
                          9*****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075265.6E-18139IPR006563POX domain
PROSITE profilePS5007112.19588151IPR001356Homeobox domain
CDDcd000861.27E-1291152No hitNo description
SMARTSM003898.3E-1091155IPR001356Homeobox domain
SuperFamilySSF466891.41E-1792158IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-2994157IPR009057Homeodomain-like
PfamPF059201.9E-18108147IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MQIVVSSFDV VAGEGAAKPY TALALQTISR HFRCLRDAIC DQIRASRRSL GEQDASENSK  60
AIGISRLRFV DHHIRQQRAL QQLGMMQQHA WRPQRGLPES SVSVLRAWLF EHFLHPYPKD  120
SDKIMLARQT GLTRSQVSNW FINARVRLWK PMVEEMYKEE AGDAKIDSNS SSDVAPRLAT  180
KDSKVEERGE LHQNAASEFE QYNSGQILES KSNHEVDVEM EGASNAETQS QSGMENQTGE  240
PLPAMDNCTL MQDAFVQSND RFSEFGSFGS GNVLPNGVSL TLGLQQGEGS NLPMSIETHV  300
SYVPLRADDM YSTAPTTMVP ETAEFNCLDS GNRQQPFWLL PSAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-1697155563Homeobox protein Meis2
3k2a_B2e-1697155563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400053923
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4067030.0AF406703.1 Solanum tuberosum BEL1-related homeotic protein 30 (Bel30) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006362026.10.0PREDICTED: BEL1-related homeotic protein 30 isoform X1
SwissprotQ9SIW11e-93BLH7_ARATH; BEL1-like homeodomain protein 7
TrEMBLM1D1Z10.0M1D1Z1_SOLTU; Uncharacterized protein
TrEMBLM1D1Z20.0M1D1Z2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000795170.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.16e-96BEL1-like homeodomain 7
Publications ? help Back to Top
  1. Chen H,Rosin FM,Prat S,Hannapel DJ
    Interacting transcription factors from the three-amino acid loop extension superclass regulate tuber formation.
    Plant Physiol., 2003. 132(3): p. 1391-404
    [PMID:12857821]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]