PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400053924
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TALE
Protein Properties Length: 646aa    MW: 71593 Da    PI: 4.9426
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400053924genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.32.9e-094114481954
                           HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
              Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           Fe   ++yp+ +++  LA+++gLt +qV++WF N R +
  PGSC0003DMP400053924 411 FEHflHPYPKDSDKIMLARQTGLTRSQVSNWFINARVR 448
                           554459******************************88 PP
2BELL127.16.2e-41273344172
                  BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                           e+qe+q+k akLls+l+e+d+rY+qy++q+q+v+ssF++vag g+akpYt+lAl++iSrhFrcL+dai++qi
  PGSC0003DMP400053924 273 EKQEVQNKLAKLLSMLDEIDRRYRQYYHQMQIVVSSFDVVAGEGAAKPYTALALQTISRHFRCLRDAICDQI 344
                           689********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.1E-61195342IPR006563POX domain
PfamPF075269.0E-51201340IPR006563POX domain
PROSITE profilePS5007112.195389452IPR001356Homeobox domain
SMARTSM003898.3E-10392456IPR001356Homeobox domain
CDDcd000863.37E-12392453No hitNo description
SuperFamilySSF466893.72E-17393459IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-28395458IPR009057Homeodomain-like
PfamPF059204.3E-18409448IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 646 aa     Download sequence    Send to blast
MATYFPSPNN QRDADQTFQY FRQSLPESYS EASNAPENMM VFMNYSSSGA YSDMLTGTSQ  60
QQHSCIDIPS IGATSSNTSQ QEILSNLGGS QMGIQDFSSW RDSRNEMLAD NVFQVAQNVQ  120
GQGLSLSLGS NIPSGIGISH VQSQNPNQGG GFNMSFGDGD NSQPKEQRNA DYFPPDNPGR  180
DLDAMKGYNS PYGTSSIART IPSSKYLKAA QYLLDEVVSV RKAIKEQNSK KELTKDSRES  240
DVDSKNISSD TPANGGSNPH ESKNNQSELS PTEKQEVQNK LAKLLSMLDE IDRRYRQYYH  300
QMQIVVSSFD VVAGEGAAKP YTALALQTIS RHFRCLRDAI CDQIRASRRS LGEQDASENS  360
KAIGISRLRF VDHHIRQQRA LQQLGMMQQH AWRPQRGLPE SSVSVLRAWL FEHFLHPYPK  420
DSDKIMLARQ TGLTRSQVSN WFINARVRLW KPMVEEMYKE EAGDAKIDSN SSSDVAPRLA  480
TKDSKVEERG ELHQNAASEF EQYNSGQILE SKSNHEVDVE MEGASNAETQ SQSGMENQTG  540
EPLPAMDNCT LMQDAFVQSN DRFSEFGSFG SGNVLPNGVS LTLGLQQGEG SNLPMSIETH  600
VSYVPLRADD MYSTAPTTMV PETAEFNCLD SGNRQQPFWL LPSAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A7e-16398456563Homeobox protein Meis2
3k2a_B7e-16398456563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400053924
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4067030.0AF406703.1 Solanum tuberosum BEL1-related homeotic protein 30 (Bel30) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006362026.10.0PREDICTED: BEL1-related homeotic protein 30 isoform X1
TrEMBLM1D1Z20.0M1D1Z2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000795170.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA102052226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-124BEL1-like homeodomain 6
Publications ? help Back to Top
  1. Chen H,Rosin FM,Prat S,Hannapel DJ
    Interacting transcription factors from the three-amino acid loop extension superclass regulate tuber formation.
    Plant Physiol., 2003. 132(3): p. 1391-404
    [PMID:12857821]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]