PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400053936

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

SRS

Protein Properties

Length: 220aa MW: 24684.3 Da PI: 8.2393

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400053936	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	194.3	4.1e-60	17	157	5	154
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklss 93 +++CqdCGnqakkdC++ RCRtCCksrgf+C+thvkstWvp+a rr r++ ++ ++++ ++++++ ++ + + ++ + ++ PGSC0003DMP400053936 17 SSRCQDCGNQAKKDCTYLRCRTCCKSRGFHCETHVKSTWVPVATRRPRHHLHHHHHHSTIQQQQQQLQNGP---------NPKRYRSNE 96 579******************************************976665544433333322222222.........222222223 PP DUF702 94 aeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 e ++P evss+avfrc++vss+d++ +++aYqt+v+i+GhvfkGiLydqG+++ PGSC0003DMP400053936 97 VMIGDDHEGGHFPGEVSSPAVFRCIHVSSIDNAVDQYAYQTSVKIAGHVFKGILYDQGPDN 157 33334567889**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.0E-60	17	156	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	4.9E-27	20	61	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	6.5E-27	107	155	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MRREEEEEGR VSSSLSSSRC QDCGNQAKKD CTYLRCRTCC KSRGFHCETH VKSTWVPVAT 60 RRPRHHLHHH HHHSTIQQQQ QQLQNGPNPK RYRSNEVMIG DDHEGGHFPG EVSSPAVFRC 120 IHVSSIDNAV DQYAYQTSVK IAGHVFKGIL YDQGPDNESP RYNNYMAGES SSSGFQLHQP 180 PILPTTTTTS PPPPSSTFPN LFSAFNMPGT QFFPYPKSS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400053936

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975513	1e-155	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006362016.1	1e-165	PREDICTED: protein SHI RELATED SEQUENCE 1
Swissprot	Q9LQZ5	3e-50	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	M1D203	1e-163	M1D203_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400079536	1e-164	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4156	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	3e-47	SHI-related sequence 5

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400053936

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]