PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400054198
Common NameLOC102604456
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 384aa    MW: 42701 Da    PI: 9.8611
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400054198genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00038339358323
                           ETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                           C+ Cgk+F  ++ L+ H++++
  PGSC0003DMP400054198 339 CSQCGKPF-KPEKLHAHMKSC 358
                           ********.**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF061366.8E-4115176IPR010369Protein of unknown function DUF966
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MEGQNQGGGE VRRLHIIYFL SRKGRIEHPH LIRVHHFSRN GIRLKDIKRW LGELRGKDMP  60
ESFAWSYKRK YKTGYVWQDL LDEDLITPIS DNEYVLKGSE IPSITTIKDV SCGEKEVTTA  120
IMQKEQTKQE DQDQVFLMDS SKKISLEIEQ DSQNNISSET STLTTNSPKF EEEEKVGNKI  180
ENNSSFSSNS SSSISSFGSM KTKKKTEDSE EKIDTSQNTE KTSKIPKFNK SRSYSNGASS  240
IFRNLITCGA VDTNDSGIIP LKKNKTSAGG EKTVSFSSEI CKADKIGGSQ RIFGTAWNQQ  300
QTNARKSCDG AFSMSKNKSE FGSRRSVSAN YKPIHGPNCS QCGKPFKPEK LHAHMKSCKG  360
MKALSKGAAT DKTSKNAPKI DSL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400054198
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006359179.10.0PREDICTED: protein UPSTREAM OF FLC
TrEMBLM1D2N40.0M1D2N4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000798950.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52061315
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]