PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400054262
Common NameLOC102589597
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 254aa    MW: 28806.7 Da    PI: 6.2759
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400054262genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM73.84.3e-2351362128
                   NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpk....kvkaeek.ewyfFskrdkkyatgkrknr.atksgy 82 
                             GfrF+Ptd e v  +L k ++gk ++ + +  ++vd y+  ePwd+ +    +++ ++  ++ fF+++ kk+ +++r +r + ++g 
  PGSC0003DMP400054262   5 KEGFRFSPTDAEAV-TFLLKFIAGKLMNDSGFiTTHVDTYSKqEPWDIYShgvpCCNDDDCtQYRFFITKLKKK-SKSRYSRdVGNKGS 91 
                           68************.8899999999988878735566877544*****73356644444442555777666665.56788886889*** PP

                   NAM  83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           Wk++ k+k+v +++g ++g kk++ +  ++  k e+ +W+m+ey l
  PGSC0003DMP400054262  92 WKQQDKSKPVRKSGGPVIGYKKSMCYK-NKGYKQENGHWLMKEYDL 136
                           *************************97.66677789********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.12E-213158IPR003441NAC domain
PROSITE profilePS5100524.9444159IPR003441NAC domain
PfamPF023653.3E-146136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MENLKEGFRF SPTDAEAVTF LLKFIAGKLM NDSGFITTHV DTYSKQEPWD IYSHGVPCCN  60
DDDCTQYRFF ITKLKKKSKS RYSRDVGNKG SWKQQDKSKP VRKSGGPVIG YKKSMCYKNK  120
GYKQENGHWL MKEYDLSTYI LDKFDKDCRD YVLCAIKKRT RTKGTMKLMN AVPEGCTNSE  180
DQSSASVEST SYDEALQAQL ELLNNMQDVT NMVVVVPLSS PDTFEAMPML DIDFDILPDF  240
DCLGSITDSL CSY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400054262
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015169693.10.0PREDICTED: NAC domain-containing protein 78-like
TrEMBLM1D2T50.0M1D2T5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000799900.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22191254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.12e-13NAC domain containing protein 2
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]