PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400054553
Common NameLOC102596464
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 258aa    MW: 28062.4 Da    PI: 7.1155
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400054553genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.32.8e-13192237655
                           HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +++Er RR ri +++ +L+el+P+     +k  + a++Le+AveY+k Lq
  PGSC0003DMP400054553 192 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLEEAVEYVKFLQ 237
                           689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.958186236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-16189247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.30E-12190241No hitNo description
Gene3DG3DSA:4.10.280.109.1E-17191249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-10192237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-13192242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MQRGTAGAGG GGLSRFRSAP ATWLEALLES DTENEVILNP SSTILHTPNK PPPHPSTPKL  60
PELKLETGGA TRFTGDPGLF ESGGSSNFLR QNSSPAEFLS HISSDGYFSN YGIPSSLDYL  120
SPSVDVSQSA KRTRDGDSES SPRKLASQLK GESSGQLHGS GGSLDAEMEN LMDDLVPCKV  180
RAKRGCATHP RSIAERVRRT RISDRIRKLQ ELVPNMDKQT NTADMLEEAV EYVKFLQKQI  240
QELTEHQKKC TCSMKDQ*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400054553
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006356502.10.0PREDICTED: transcription factor bHLH81-like
SwissprotQ9C8P81e-75BH080_ARATH; Transcription factor bHLH80
TrEMBLM1D3H50.0M1D3H5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000804181e-177(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.12e-61bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]