PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400055009
Common NameLOC102581508
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 180aa    MW: 20760.2 Da    PI: 8.3454
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400055009genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.45.8e-191669356
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                          ++ +++++q++ Le  F +n++++ +++ +LA++lgL+ rqV +W+qN+Ra++k
  PGSC0003DMP400055009 16 HKKRLNQDQVRLLEISFSSNNKLDSDRKSQLAQELGLPPRQVAIWYQNKRARWK 69
                          67789************************************************9 PP
2HD-ZIP_I/II111.46.1e-3616107293
           HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                           +k+rl+++qv+lLE sF++++kL+++rK++la+eLgl prqva+W+qn+RAR+k++ lE+dy++L++++d+  e+ne+L+ eve+Lr+e
  PGSC0003DMP400055009  16 HKKRLNQDQVRLLEISFSSNNKLDSDRKSQLAQELGLPPRQVAIWYQNKRARWKSQSLEVDYKTLQQRLDNALEDNEKLKLEVERLRKE 104
                           69**************************************************************************************9 PP

           HD-ZIP_I/II  91 lke 93 
                           l++
  PGSC0003DMP400055009 105 LNK 107
                           975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.4E-161475IPR001356Homeobox domain
PfamPF000464.0E-161669IPR001356Homeobox domain
CDDcd000862.35E-141672No hitNo description
SuperFamilySSF466893.94E-171680IPR009057Homeodomain-like
PROSITE profilePS5007115.4831771IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.2E-191878IPR009057Homeodomain-like
PRINTSPR000315.9E-64251IPR000047Helix-turn-helix motif
PROSITE patternPS0002704669IPR017970Homeobox, conserved site
PRINTSPR000315.9E-65167IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009646Biological Processresponse to absence of light
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MNFLSSQTRK IHLKCHKKRL NQDQVRLLEI SFSSNNKLDS DRKSQLAQEL GLPPRQVAIW  60
YQNKRARWKS QSLEVDYKTL QQRLDNALED NEKLKLEVER LRKELNKNQE VLLGFNTTTN  120
NYSSISSSCD EVGSTSCLQL HDQSKHNHLD KEFYACLIGD EGHFGTHHDG HNFFASSLS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1818RKIHLKCHKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400055009
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006364310.11e-130PREDICTED: homeobox-leucine zipper protein ATHB-52-like
TrEMBLM1D4I81e-129M1D4I8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000812961e-130(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27152453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.11e-24homeobox protein 52
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]