PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400055027
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 220aa    MW: 25122.6 Da    PI: 4.5552
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400055027genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.1e-191058355
                   AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ ++k++g
  PGSC0003DMP400055027 10 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREARKIRG 58
                          9*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-22967IPR016177DNA-binding domain
PROSITE profilePS5103223.775966IPR001471AP2/ERF domain
SMARTSM003804.4E-39972IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-32967IPR001471AP2/ERF domain
PfamPF008473.6E-121058IPR001471AP2/ERF domain
PRINTSPR003674.7E-121021IPR001471AP2/ERF domain
CDDcd000181.56E-331067No hitNo description
PRINTSPR003674.7E-123248IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MKKRQRKNLY RGIRQRPWGK WAAEIRDPRK GVRVWLGTFN TAEEAARAYD REARKIRGKK  60
AKVNFPNEDD DHYYSHPEPP CESYDTTSTY NQESNNCYPF YSIENTEPVM EFAIANKNSS  120
GSAYNGIEDQ NVEGEEQTVK NSNNRIVEEE EKTEDEVQIL SDELMAYESL MKFYEIPYVD  180
GQSVAATVNP AAETAVGGGS MELWSFDDVS RLQPSYNVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-231066360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A3e-2210681574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400055027
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankSTU776550.0U77655.1 Solanum tuberosum DNA binding protein homolog (STWAAEIRD) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001275232.11e-144DNA binding protein homolog
TrEMBLM1D4K41e-161M1D4K4_SOLTU; Uncharacterized protein
TrEMBLM1D4K51e-162M1D4K5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000813221e-162(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.13e-29ERF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]