PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400055539
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Nin-like
Protein Properties Length: 754aa    MW: 85322.1 Da    PI: 5.6666
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400055539genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK50.34.6e-16572619552
                RWP-RK   5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                           i+ + l+++F ++++dAAk+L v+  +LKriC +y I RWP  k +++
  PGSC0003DMP400055539 572 ITRKILEQHFGMTLQDAAKNLHVSRATLKRICKEYEITRWPNYKTRKV 619
                           89999************************************9988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151911.365553640IPR003035RWP-RK domain
PfamPF020422.1E-17572619IPR003035RWP-RK domain
SuperFamilySSF542771.9E-15666748No hitNo description
SMARTSM006662.6E-14668750IPR000270PB1 domain
PROSITE profilePS5174520.79668742IPR000270PB1 domain
PfamPF005643.7E-15669749IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2401.2E-14669748No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 754 aa     Download sequence    Send to blast
MEHSPSDVCS QMPCQLDWCQ LESNAWAFSS RKYKDELGYQ RTIYPIMSAA SVVSMFPTVK  60
WRIQSVMEKM STPNICLVQF WAPIKVNGST FLSTADQTFA FYNELDKRLS SYRKLCLDTL  120
IPIDDYTESL FGPIERVYTR CLPEYNPDVQ SYSSAEFPLL ETAIRLGIHS YYAVPVVNNY  180
DQQYRGVLEI VSTQPSLHLS HLITGSKICS FQLYSVCNSR DMLFGLLEPP VDDRLDEIKN  240
GLYEILERDS LPFAQIWIPY SPFVSLKVLY RAAASIYERS SSMYHEFEHV SEDCFIESGT  300
ALVGRAFASQ GSCFCKDVVL LSIKEYPLVP SARKVRFTQS LAICLQSKCT NNSVYVVEYF  360
LPPNKMSARD TRTYINMLLS TTKERLPGFI VAPGKELGQR MLVEVVKVSP SDEFDSFEIG  420
QSLLSVQSLQ DGGGTTEIGQ RLLSVQFLQD VGETTEIDSF CQQSNNVVAA AALLVPSCSS  480
DKRDSLNCER TMEVDLLLPH PIEEAVTNRG KVNLDVAHDD HIEDTPEIMQ LDSHFEQPNI  540
EINSAGNATT NNNKIHSHKK NTIQRIEKDY GITRKILEQH FGMTLQDAAK NLHVSRATLK  600
RICKEYEITR WPNYKTRKVN VHVSQGISFQ GAEPYVVDQQ CPALSQEKGT NYLGHKISPA  660
TGKPCDSVMT VKVTYRGDII KFQLSLSSTR VELEGEVEKR LKISLERFSI KYQDEGDDWI  720
LITTDSDLRD RMNSLRLFGR TTMRLLVTPE ADT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400055539
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2316650.0AC231665.1 Solanum tuberosum chromosome 11 clone RH021O18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015168300.10.0PREDICTED: protein NLP7-like
RefseqXP_015168301.10.0PREDICTED: protein NLP7-like
RefseqXP_015168302.10.0PREDICTED: protein NLP7-like
TrEMBLM1D5T70.0M1D5T7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000823730.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10406515
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24020.14e-37NIN like protein 7
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]