PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400056067
Common NameLOC102587723
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GATA
Protein Properties Length: 329aa    MW: 34998.6 Da    PI: 6.5847
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400056067genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.91.9e-15246281134
                  GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                           C++C+ ++  Tp++Rrgp g+++LCnaCGl+++ kg
  PGSC0003DMP400056067 246 CRHCNISSksTPMMRRGPAGPRSLCNACGLKWANKG 281
                           *****99999**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009793.6E-12111146IPR010399Tify domain
PROSITE profilePS5132014.818111146IPR010399Tify domain
PfamPF062001.0E-12114145IPR010399Tify domain
PROSITE profilePS5101713.126178220IPR010402CCT domain
PfamPF062034.9E-16178220IPR010402CCT domain
SMARTSM004012.7E-11240293IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-11241291No hitNo description
Gene3DG3DSA:3.30.50.103.2E-14244287IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.26E-14245295No hitNo description
PROSITE patternPS003440246273IPR000679Zinc finger, GATA-type
PfamPF003201.9E-13246281IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.576250297IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MAEANRRANM YGRETMNAAL HQDRHQQTQI DDDDDDDVVA AGGGGGGGGS GGGIESMDNP  60
TPHIRYDQHH HSHSHALHNG GAGGSMEMNG VEGVSHNALY GPSSEIVPTA GSGASDQLTL  120
SFQGEVYVFD AVSPEKVQAV LLLLGGYEVP PGIPAVNVAP QSQRASGDFP GRLNQPQRAA  180
SLNRFREKRK ERCFDKKIRY TVRKEVAMRM QRKKGQFTSA KSIPDEVGSS AEWNEGSGQE  240
EQETSCRHCN ISSKSTPMMR RGPAGPRSLC NACGLKWANK GILRDLSKVP APGAQDQTAK  300
PSEQSNGEPN GSDAMAAIIT PDDNNPVG*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00369DAPTransfer from AT3G21175Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400056067
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006351719.20.0PREDICTED: GATA transcription factor 28-like
SwissprotQ8GXL71e-78GAT24_ARATH; GATA transcription factor 24
TrEMBLM1D7390.0M1D739_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000837730.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26722348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.24e-81ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]