PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400056096
Common NameLOC102589426
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HRT-like
Protein Properties Length: 522aa    MW: 58139 Da    PI: 10.2353
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400056096genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like53.73.6e-17272302131
              HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                           iCGv+l++GsvC r+P+ g+KRC+eHKGm++
  PGSC0003DMP400056096 272 ICGVALGHGSVCIRPPITGNKRCAEHKGMKV 302
                           8****************************97 PP
2HRT-like46.27.9e-15330359130
              HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 
                           iCG+il+ Gs+C r P + +KRC eHKG+R
  PGSC0003DMP400056096 330 ICGFILDSGSPCARIPFQRNKRCMEHKGRR 359
                           8****************************9 PP
3HRT-like54.91.5e-17419449131
              HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                           iCGv+l+dGs+C+rqP+ gRKRC  HKGmR+
  PGSC0003DMP400056096 419 ICGVHLNDGSFCTRQPAVGRKRCVGHKGMRV 449
                           8*****************************7 PP
4HRT-like45.21.6e-14491520130
              HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 
                           +CG++l++Gs+C+r+  +g+KRC++HKG++
  PGSC0003DMP400056096 491 TCGATLRNGSFCRRKSSEGNKRCWQHKGRK 520
                           7***************************97 PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000033Biological Processregulation of seed dormancy process
GO:0097100Molecular Functionsupercoiled DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MAAADKSFTG WLKREDCKRT KHDSAFSDWK ILVGPNDWED YLLGKEGTER YRTQNLPNCT  60
SCSGVYELGI AVSRRKTERE ASRLGADYIV PVYVGKSDNV RTRLQQYGRV GAHLENDCSN  120
SELRVDKNIS GPKRAGLFTE TFSRGFSIVY RWAPMNDNKD AERTEAQLLD KFDYAWNKGS  180
NGVRRHNDVL RKLDGISRET RFPAFIRKLQ LSLGKRKGIR IKACEPLLLE NGSDVHDSFK  240
STNFLPQILK FGRSQPRIVS LNFGVNGDPN IICGVALGHG SVCIRPPITG NKRCAEHKGM  300
KVNSVKSKLI AEGNESTRPC VSIGEENAPI CGFILDSGSP CARIPFQRNK RCMEHKGRRN  360
QGSISQPMTD KIGQWTHNPI LENRTSSSND CQHILSSRAG TQDSQEFSSS LIHQNYNVIC  420
GVHLNDGSFC TRQPAVGRKR CVGHKGMRVK EPISKQLGVE IPSLFAGPVA KISSGKKHLN  480
INIPSVNYSP TCGATLRNGS FCRRKSSEGN KRCWQHKGRK N*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400056096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345326.10.0PREDICTED: uncharacterized protein LOC102589426 isoform X1
TrEMBLM1D7670.0M1D767_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000838170.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77412330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.12e-95effector of transcription2
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]