PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400056213
Common NameLOC102602352
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ZF-HD
Protein Properties Length: 180aa    MW: 19921.9 Da    PI: 8.4917
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400056213genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer902.3e-28863457
           ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegee..gtaaalkCaACgCHRnFHRrev 57
                            Y+eCl+NhAaslG++a+DGCgEf+ +++++  g +++l+CaACgCHRnFHR+ +
  PGSC0003DMP400056213  8 DIYRECLRNHAASLGSYATDGCGEFTLDDSNTspGGSTSLNCAACGCHRNFHRKFT 63
                          57************************98666556779****************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047708.8E-24961IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015668.1E-241061IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152322.9721062IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257749.0E-181061IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.603.4E-2891162IPR009057Homeodomain-like
SuperFamilySSF466891.45E-1693160IPR009057Homeodomain-like
TIGRFAMsTIGR015655.7E-27102160IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MQGAKSNDIY RECLRNHAAS LGSYATDGCG EFTLDDSNTS PGGSTSLNCA ACGCHRNFHR  60
KFTCGGSYSN NSSRDDREII AAHDYRLATT EESPAVSERS GKKRFRTKFT GDQKEKMLAF  120
AEKLGWTLQR KDEENETERF CREIGVSRKV FKVWMHNHKN NSSSVSSTIT GNNASSLTQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-211031641878ZF-HD homeobox family protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400056213
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363993.11e-132PREDICTED: zinc-finger homeodomain protein 9-like
TrEMBLM1D7H01e-131M1D7H0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000839931e-131(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA118652023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.26e-39homeobox protein 31
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]