PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400056250
Common NameLOC102579619
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bZIP
Protein Properties Length: 414aa    MW: 44511.4 Da    PI: 9.5367
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400056250genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_168.11.4e-21270332163
                           XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                           e elkre+rkq+NRe+ArrsR+RK+ae eeL+ +v++L++eN aL++e+++ +++++klk e+
  PGSC0003DMP400056250 270 EHELKREKRKQSNRESARRSRLRKQAEAEELAVRVQSLTSENLALRSEINKFSEHSEKLKVEN 332
                           679*********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077772.1E-30193IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165962.1E-15131245No hitNo description
Gene3DG3DSA:1.20.5.1706.3E-16265329No hitNo description
PfamPF001706.8E-20270332IPR004827Basic-leucine zipper domain
SMARTSM003388.2E-19270334IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.599272335IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.88E-10273329No hitNo description
CDDcd147022.44E-19275324No hitNo description
PROSITE patternPS000360277292IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MGNIEDGKSS TPEKSFSTAP DQSNFHVYPD WAAMQAYYGH RVAVPPYVNP AVAPGHAPHP  60
YMWGPLPPMM PPYGTPYAGV YAHGGVYPHP GVPIVSRPQA HGMTSSPAVS QTMNTASLSM  120
DASAKSSGNS DQGLMSQSKG FNGLGMSIGN FTVDNGDGTD HGPSQSGQTE GSSDGSNIHT  180
AEVGEHRKKR SREATPNNSG DRKSQRLCSP QRTKEVNGAS EKGIGNPGDI AEKLAGTTFS  240
PIMTTTPLVK SSPTSRISPA VPGEVWLQNE HELKREKRKQ SNRESARRSR LRKQAEAEEL  300
AVRVQSLTSE NLALRSEINK FSEHSEKLKV ENAALMERLK NKLGQAKEVT LGMIDDKRLK  360
PVSTADLLAR VNNNNGSFNR TNEDGEVHDS TSGAKLRQLL DASPRTDHAV AAR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1286292RRSRLRK
2286293RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400056250
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345571.10.0PREDICTED: transcriptional activator TAF-1-like
RefseqXP_015163426.10.0PREDICTED: transcriptional activator TAF-1-like
SwissprotQ990891e-122CPRF1_PETCR; Common plant regulatory factor 1
TrEMBLM1D7J90.0M1D7J9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000842030.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31132447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.13e-77G-box binding factor 3
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  3. Feldbrügge M,Hahlbrock K,Weisshaar B
    The transcriptional regulator CPRF1: expression analysis and gene structure.
    Mol. Gen. Genet., 1996. 251(6): p. 619-27
    [PMID:8757392]