PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400056253
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bZIP
Protein Properties Length: 381aa    MW: 40914.6 Da    PI: 9.9473
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400056253genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_168.31.2e-21237299163
                           XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                           e elkre+rkq+NRe+ArrsR+RK+ae eeL+ +v++L++eN aL++e+++ +++++klk e+
  PGSC0003DMP400056253 237 EHELKREKRKQSNRESARRSRLRKQAEAEELAVRVQSLTSENLALRSEINKFSEHSEKLKVEN 299
                           679*********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077772.0E-19160IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.8E-1598212No hitNo description
Gene3DG3DSA:1.20.5.1708.1E-16232296No hitNo description
SMARTSM003388.2E-19237301IPR004827Basic-leucine zipper domain
PfamPF001706.0E-20237299IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.599239302IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.06E-10240296No hitNo description
CDDcd147024.94E-19242291No hitNo description
PROSITE patternPS000360244259IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MQAYYGHRVA VPPYVNPAVA PGHAPHPYMW GPLPPMMPPY GTPYAGVYAH GGVYPHPGVP  60
IVSRPQAHGM TSSPAVSQTM NTASLSMDAS AKSSGNSDQG LMSQSKGFNG LGMSIGNFTV  120
DNGDGTDHGP SQSGQTEGSS DGSNIHTAEV GEHRKKRSRE ATPNNSGDRK SQRLCSPQRT  180
KEVNGASEKG IGNPGDIAEK LAGTTFSPIM TTTPLVKSSP TSRISPAVPG EVWLQNEHEL  240
KREKRKQSNR ESARRSRLRK QAEAEELAVR VQSLTSENLA LRSEINKFSE HSEKLKVENA  300
ALMERLKNKL GQAKEVTLGM IDDKRLKPVS TADLLARVNN NNGSFNRTNE DGEVHDSTSG  360
AKLRQLLDAS PRTDHAVAAR *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1253259RRSRLRK
2253260RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400056253
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankZ486031e-158Z48603.1 N.tabacum mRNA for TAF-3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345571.10.0PREDICTED: transcriptional activator TAF-1-like
RefseqXP_015163426.10.0PREDICTED: transcriptional activator TAF-1-like
SwissprotQ990891e-108CPRF1_PETCR; Common plant regulatory factor 1
TrEMBLM1D7K20.0M1D7K2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000842030.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.15e-66G-box binding factor 3
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  3. Feldbrügge M,Hahlbrock K,Weisshaar B
    The transcriptional regulator CPRF1: expression analysis and gene structure.
    Mol. Gen. Genet., 1996. 251(6): p. 619-27
    [PMID:8757392]