PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400056263
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 149aa    MW: 16837.2 Da    PI: 9.5747
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400056263genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY27.56.3e-09128148222
                           --SS-EEEEEEE--TT-SS-E CS
                  WRKY   2 dDgynWrKYGqKevkgsefpr 22 
                           +Dg nWrKYGqK + g+++pr
  PGSC0003DMP400056263 128 EDGLNWRKYGQKLILGAKYPR 148
                           7*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-7119148IPR003657WRKY domain
PROSITE profilePS508119.718122148IPR003657WRKY domain
SuperFamilySSF1182906.93E-7123148IPR003657WRKY domain
PfamPF031067.8E-6128148IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0006032Biological Processchitin catabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005783Cellular Componentendoplasmic reticulum
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004568Molecular Functionchitinase activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MGENNFWERE VVITELTKGK ELMLQLQKHF DPMKQDVYRY LAAEILSSYD KAMSLLNGTA  60
LSGMMSKSKE IINPSPSSST ASQLESHQLL ADSSTKSCDR PSKSRKRKML APRTEYVEAR  120
HGEEVPPEDG LNWRKYGQKL ILGAKYPR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103108SRKRKM
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400056263
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754441e-148HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345566.14e-85PREDICTED: probable WRKY transcription factor 41
TrEMBLM1D7L01e-106M1D7L0_SOLTU; Uncharacterized protein
TrEMBLM1D7L11e-105M1D7L1_SOLTU; Uncharacterized protein
STRINGSolyc05g050330.2.14e-93(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.11e-13WRKY family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]