PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400056411
Common NameLOC102588591
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family SBP
Protein Properties Length: 466aa    MW: 50573.1 Da    PI: 8.8793
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400056411genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP127.26.2e-40176252278
                           -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                   SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                           CqvegC+ dls+akey+r+h+vC+ hsk+p+v+v+g+ +rfCqqCsrfh++sefDe+krsCrrrL++hn+rrrk+++
  PGSC0003DMP400056411 176 CQVEGCNLDLSSAKEYYRKHRVCDSHSKSPKVIVAGVARRFCQQCSRFHSVSEFDEKKRSCRRRLSDHNARRRKPHQ 252
                           **************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.108.0E-33168237IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.744173250IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.24E-37174255IPR004333Transcription factor, SBP-box
PfamPF031102.3E-31176249IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MEWNVKWDWG NLVMFGSKAS ESPKELQLTD WGVEEEGELD GGSFNLSSGG SGTGGYGSDV  60
KCGSSIKSSI SASTDSSPKE GFKASNFAFE AFNTSPEDPS KKLESSKAEV SRNSPPMEAS  120
VGSVEPVIGL KLGKRTCETF GGGSSAKVSS FPPNPTSSAA TKKAKSSSQN APIPHCQVEG  180
CNLDLSSAKE YYRKHRVCDS HSKSPKVIVA GVARRFCQQC SRFHSVSEFD EKKRSCRRRL  240
SDHNARRRKP HQETIQFNSA RLSSLFYDSR QPMNLVLNQA QLIHSRAAAN STWESTQDSK  300
FSITRGFTPK PERTSSTNGK SLLEGIQFSR AVGAQSNASS LLLPSKGTTA EVFNRGAKES  360
MFNMVTGPEF PRALSLLSTN SWGSSEPETV SLNHANQTSM PEQMMQAIPQ GVPHMSSQYW  420
QQAGQHSSDT RYHTLAANSN SGGSFQEMGV FKAPFDTDFY LNALN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-26167249284squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1231248KKRSCRRRLSDHNARRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400056411
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006352180.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_006352181.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_006352182.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_015166302.10.0PREDICTED: squamosa promoter-binding-like protein 12
TrEMBLM1D7X70.0M1D7X7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000847340.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41292444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.33e-63squamosa promoter binding protein-like 2
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]