PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400056480
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 468aa    MW: 52777.8 Da    PI: 6.6541
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400056480genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.000575881123
                          EEETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                          + C  Cgk Fs+   L  H+++ H
  PGSC0003DMP400056480 58 HICCECGKEFSSGKALGGHMSSaH 81
                          68******************9988 PP
2zf-C2H213.10.00028127146221
                           EETTTTEEESSHHHHHHHHH CS
               zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                           +C++C+k F++k +L  H+r
  PGSC0003DMP400056480 127 SCEICHKNFPSKKSLFGHMR 146
                           6******************8 PP
3zf-C2H214.40.00011337359123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ykC+ Cg++F ++  L  H ++H
  PGSC0003DMP400056480 337 YKCNECGRMFATHQALGGHRSSH 359
                           9***************9999998 PP
4zf-C2H213.50.00022412434123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           +kC+ C+k F++   L  H+r+H
  PGSC0003DMP400056480 412 HKCKFCDKIFPTGQALGGHQRSH 434
                           79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.67E-75680No hitNo description
SMARTSM003550.385881IPR015880Zinc finger, C2H2-like
PfamPF139127.5E-85881IPR007087Zinc finger, C2H2
PROSITE profilePS501579.645886IPR007087Zinc finger, C2H2
PROSITE patternPS0002806081IPR007087Zinc finger, C2H2
SuperFamilySSF576671.67E-7121148No hitNo description
SMARTSM003550.024126148IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.66126153IPR007087Zinc finger, C2H2
PROSITE patternPS000280128148IPR007087Zinc finger, C2H2
PfamPF139127.6E-6128150IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.635337364IPR007087Zinc finger, C2H2
SMARTSM003550.022337359IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.81E-9337359No hitNo description
PfamPF139127.0E-7337360IPR007087Zinc finger, C2H2
PROSITE patternPS000280339359IPR007087Zinc finger, C2H2
SuperFamilySSF576672.81E-9407434No hitNo description
PfamPF139128.9E-9411435IPR007087Zinc finger, C2H2
PROSITE profilePS501579.868412439IPR007087Zinc finger, C2H2
SMARTSM003550.018412434IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280414434IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MEAEDDQENN GSCEKGLSSS NFKVKINLKL KKNKDESCGD EDVREEKNLL LMKQKKDHIC  60
CECGKEFSSG KALGGHMSSA HVQANQRLEE SWKKKKISIK RSRFDDYDDD EEVVLEEEEE  120
IGDVVVSCEI CHKNFPSKKS LFGHMRCHPD REWRGMKPPS KKISKNKGFR ATFEDVNEGF  180
EDCFASLRDE EEEEGGGIHF NVVELPPLKD WGAKDRRGRS PLKRSVSSTI MDDDKELHDA  240
VQQLISLVNG DVNNNNNNNN RSEVMMSSSN SVGSAPKEAA FRDLKDKSKK KGVVDGTKEK  300
NREETKKRKR EKELVKLEPG QDLVHSPVLK KSVEVKYKCN ECGRMFATHQ ALGGHRSSHN  360
KFKISIENTI DGIKGNNTQD HGQLGNQEIN NYGNIIINDQ YGSNNNINNN VHKCKFCDKI  420
FPTGQALGGH QRSHLTNNQE ESSSQNASKV LDFDLNELPH LDDDTLL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1288309KKKGVVDGTKEKNREETKKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400056480
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1364710.0AC136471.1 Solanum demissum chromosome 11 clone PGEC561, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027768146.10.0zinc finger protein ZAT9-like
TrEMBLM1D8340.0M1D834_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000848050.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20502263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-15C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]