PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400056532
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HSF
Protein Properties Length: 246aa    MW: 29388.5 Da    PI: 7.8368
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400056532genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind117.67.6e-37131052103
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl+k+y++++d++ ++++sw e +++fvv+ + efak++Lp+yFkh+nf+SFvRQLn+YgFkk+  e+         weF++++Fkkg+
  PGSC0003DMP400056532  13 FLTKTYQLVDDPSSDHIVSWGEYETTFVVWRPPEFAKDLLPNYFKHNNFSSFVRQLNTYGFKKIVPER---------WEFANEYFKKGQ 92 
                           9****************************************************************999.........************ PP

                           XXXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkkse 103
                           k+ll++i+r+ks+
  PGSC0003DMP400056532  93 KHLLCEIQRRKST 105
                           **********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.1E-38697IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.9E-589102IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.84E-3410102IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.8E-191336IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.7E-3213102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-195163IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405276IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-196476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MFLTMQKAMV APFLTKTYQL VDDPSSDHIV SWGEYETTFV VWRPPEFAKD LLPNYFKHNN  60
FSSFVRQLNT YGFKKIVPER WEFANEYFKK GQKHLLCEIQ RRKSTPQQLH NLTPYHEHIT  120
RSIYHQETQN PSSVDHDILL ALTQDNERLR KRNIVLLSEL THMKNLYNDI IYFIQNHIKP  180
VEEKFSVFLL NEDLNQKIVD HHRHRQVHIE DHEEPKSDKV KLFGVSLCGK KRLHHERIDQ  240
EVLEC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-221010517123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400056532
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755231e-166HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015058079.21e-160heat stress transcription factor B-4b-like
SwissprotQ9C6352e-80HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLM1D8730.0M1D873_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000848570.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27212450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.17e-83heat shock transcription factor B4
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]