PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400056580
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 174aa    MW: 19986.3 Da    PI: 7.7017
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400056580genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY50.25.1e-16116169259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            D+++W+K G      +++ ++YY C    +Cp+k++ve s++dp+ v++tY+g+Hnh+
  PGSC0003DMP400056580 116 ADQWRWKKHGS-----NQTGKKYYTCNEVeDCPAKRHVEESSKDPNRVIVTYKGQHNHP 169
                           69********5.....77899*****9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081118.062110171IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.2E-16110171IPR003657WRKY domain
SuperFamilySSF1182904.32E-15112171IPR003657WRKY domain
SMARTSM007744.8E-8115170IPR003657WRKY domain
PfamPF031066.5E-12117169IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MRMAALLQVF FQEESSSVGD FRDAFAMENK RYFGLDEVIS LSKNLNTTNS RIEPHNQENQ  60
IETIPNTPLM VVEHEEKKKA RYSMLSSSTD QSGNAFANRG KKTETHELLA EELWKADQWR  120
WKKHGSNQTG KKYYTCNEVE DCPAKRHVEE SSKDPNRVIV TYKGQHNHPP PKS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400056580
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015165592.11e-128PREDICTED: probable WRKY transcription factor 33
TrEMBLM1D8B81e-128M1D8B8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000849051e-129(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA110911323
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.12e-12WRKY DNA-binding protein 65
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]