PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400056643
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 125aa    MW: 14496.7 Da    PI: 7.0914
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400056643genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.90.0002142791251
                          HHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHH CS
                   HLH 12 RRdriNsafeeLrellPk.askapskKlsKaeiLekAveYI 51
                          + +++N+ +e++ + + + +   p+ + +K  +L+++ e I
  PGSC0003DMP400056643 42 YLSDVNNLYEKIASEVQHsL---PNDRIEKLKMLKMTLERI 79
                          7899**************77...**************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MEMNIDNNTP APVHSTVQTE NENGVDWQEE LYQKIKSMKE MYLSDVNNLY EKIASEVQHS  60
LPNDRIEKLK MLKMTLERIM LFLRLNKHDI NLVQKEKLPS VEKHISFFLS GKNLHKPTSS  120
PMQG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400056643
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755164e-68HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010319301.17e-48mediator of RNA polymerase II transcription subunit 15a-like
RefseqXP_015073151.25e-45mediator of RNA polymerase II transcription subunit 15a isoform X3
TrEMBLM1D8G82e-85M1D8G8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000849683e-86(Solanum tuberosum)
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]