PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400056681
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 201aa    MW: 23173.7 Da    PI: 10.5554
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400056681genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.81.7e-15348147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                          + rW +eEdell ++v+++G+++W +I + ++ gR++k c+ rw + 
  PGSC0003DMP400056681  3 KRRWNPEEDELLQKLVEEHGPKNWFLIGQLIP-GRSEKLCRFRWCNQ 48
                          579*****************************.***********985 PP
2Myb_DNA-binding45.51.7e-1457100348
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           ++T +Ed+ +++a++++G+  W+ Ia  ++ gRt++ +k++w ++l
  PGSC0003DMP400056681  57 PFTLDEDDTIIKAHAKFGNQ-WAMIACLLP-GRTDNAIKNHWSSFL 100
                           89****************99.*********.***********8875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.529153IPR017930Myb domain
SMARTSM007171.1E-12251IPR001005SANT/Myb domain
SuperFamilySSF466891.32E-27296IPR009057Homeodomain-like
PfamPF002491.2E-14348IPR001005SANT/Myb domain
CDDcd001671.53E-13547No hitNo description
Gene3DG3DSA:1.10.10.605.5E-20556IPR009057Homeodomain-like
SMARTSM007171.2E-1154102IPR001005SANT/Myb domain
PROSITE profilePS5129418.97255104IPR017930Myb domain
PfamPF002495.2E-125798IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-2057103IPR009057Homeodomain-like
CDDcd001671.59E-957100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MIKRRWNPEE DELLQKLVEE HGPKNWFLIG QLIPGRSEKL CRFRWCNQRN PQVDHRPFTL  60
DEDDTIIKAH AKFGNQWAMI ACLLPGRTDN AIKNHWSSFL KRKRPLMSED LTFKNPQPLL  120
KKLFSNREGI NSGSPYRSDL SNLGFSRFRE LGLYRHVAPP SRNLPLSAFS PVMPDQLISL  180
SPQGSDLRNL GLSRFPQLSL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-3211032104MYB PROTO-ONCOGENE PROTEIN
1mse_C4e-3211032104C-Myb DNA-Binding Domain
1msf_C4e-3211032104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400056681
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015159289.11e-79PREDICTED: transcription factor MYB44-like
RefseqXP_027772392.13e-79transcription factor MYB77-like
SwissprotO231608e-48MYB73_ARATH; Transcription factor MYB73
TrEMBLM1D8J61e-144M1D8J6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000850061e-145(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1637334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.14e-50myb domain protein 73
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]