PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400056712
Common NameLOC102593555
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 203aa    MW: 23421.1 Da    PI: 8.9745
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400056712genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.11.1e-1321481340
                          HHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
                SRF-TF 13 fskRrngilKKAeELSvLCdaevaviif 40
                          + +R + ++KKAeELS+LCd+eva+iif
  PGSC0003DMP400056712 21 LDRRETSLFKKAEELSILCDVEVAIIIF 48
                          5567888********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006613.708148IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-5160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-161294IPR002100Transcription factor, MADS-box
PfamPF003191.4E-121551IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MATKRLRDTR NYSENVRNSI LDRRETSLFK KAEELSILCD VEVAIIIFRP GKIQPITWKS  60
TNLAQDVLTR YLSFIEFKRL EKLVTHEDYL RKKVEKKEEQ ISKLEKMNEA KEMEILFNQL  120
VEGKSIDELD AREMKGLLKV FAAKLAKLDE RKKELNQPLN PPSNKENITL SASPMEESFN  180
DPWFILPIAT LGDRSGIEPG PK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400056712
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006344961.11e-145PREDICTED: agamous-like MADS-box protein AGL90
TrEMBLM1D8L91e-143M1D8L9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000850371e-144(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06500.12e-14AGAMOUS-like 96
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]