PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400056744
Common NameLOC107058472
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 112aa    MW: 12638.3 Da    PI: 10.9169
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400056744genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.66.7e-144590247
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                          +rWT++E+  ++++ + +G+g+W+ Ia+ +   Rt  q+ s+ qky
  PGSC0003DMP400056744 45 NRWTEDEQRAFLKGLNFHGKGNWTNIAKDFVPSRTSTQVASHAQKY 90
                          69*****************************9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.823995IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.1E-124191IPR009057Homeodomain-like
SuperFamilySSF466898.61E-164294IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-144293IPR006447Myb domain, plants
SMARTSM007171.9E-114393IPR001005SANT/Myb domain
PfamPF002491.1E-114590IPR001005SANT/Myb domain
CDDcd001677.82E-104691No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MDRNCSENGK SIKLFGFEIT TTTTSSAAAL TSEKDFMGRK IKKGNRWTED EQRAFLKGLN  60
FHGKGNWTNI AKDFVPSRTS TQVASHAQKY FLRLLDANSN ERKKRKKSSV F*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102106KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400056744
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2471352e-88AC247135.8 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-6o7 map 11, complete sequence.
GenBankAC2540572e-88AC254057.5 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone sle-28f9 map 11, complete sequence.
GenBankHG9755232e-88HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015159699.13e-77PREDICTED: transcription factor MYB1R1-like
SwissprotQ9FKF93e-20M5162_ARATH; Probable transcription factor At5g61620
TrEMBLM1D8P16e-76M1D8P1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000850691e-76(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74541230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01200.14e-20MYB family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]